1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ataatttccttctctttgtcataaactcataatgaatttcttgtgtgcgtgtgtatgattataagcatttgtcattgagtatttatctcctctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTGCTGAGCGGATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTAACTA
species | Glycine max |
transcript | GLYMA02G04920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTEST: gi|193466896|gb|FK430315.1|FK430315
genomic: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
EST: GGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTEST: gi|208184356|gb|GD984552.1|GD984552
genomic: GGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
EST: CGCCGGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTEST: gi|209722418|gb|BW682794.1|BW682794
genomic: CGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
EST: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTEST: gi|209721096|gb|BW666357.1|BW666357
genomic: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
EST: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTEST: gi|254327754|gb|GR834719.1|GR834719
genomic: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
EST: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTEST: gi|193626763|gb|FK574443.1|FK574443
genomic: TCGCCATTCGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
EST: CGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTG ATAAATGAGATCCCAAAGCCGACATCTGGATGCACTGAGTTCATAGAATCT
genomic: CGCCAGGAAGTTTCTTCCATTGACAACCACCTTGAATCTCTGgtattctcga ... tctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCT
tgcgtgtgtatgattataagcatttgtcattgagtatttatctcctctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTGCTGAGCGGATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTAACTA
tttatctcctctgtc CT-rich tract
tatgattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatttccttctctttgtcataaactcataatgaatttcttgtgtgcgtgtgtatgattataagcatttgtcattgagtatttatctcctctgtcacagATAAATGAGATCCCAAAGCTGACATCTGGATGCACTGAGTTCATAGAATCTGCTGAGCGGATTTTGGAGAAGAGGAAGATGAACCAAACAATGCTAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -ccttctc
- - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg