1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aaatgatttttggtcgctaacttgaagggattttttttcaggaatctgaccctttttttgttttctattttctattttctttttcatcgtttcattgcagAAATTTGACTAGGG
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAG AAATTTGACTAGGGEST: gi|120531769|gb|EH259902.1|EH259902
genomic: CACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAGgtaacaatca ... ttcattgcagAAATTTGACTAGGG
EST: ATCCACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATT-C-C-- -------AC-A--GEST: gi|213590180|gb|DB963799.1|DB963799
genomic: ATCCACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAGgtaacaatca ... ttcattgcagAAATTTGACTAGGG
EST: ATCCACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAG AAATTTGACTAGGGEST: gi|213594062|gb|DB961950.1|DB961950
genomic: ATCCACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAGgtaacaatca ... ttcattgcagAAATTTGACTAGGG
EST: ATCCACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAG AAATTTGACTAGGGEST: gi|120495797|gb|EH223964.1|EH223964
genomic: ATCCACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAGgtaacaatca ... ttcattgcagAAATTTGACTAGGG
EST: CACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAG AAATTTGACTAGGG
genomic: CACGATACACTCTACGCTTCACAAAACCTTCAAACCCAATTCCACAGgtaacaatca ... ttcattgcagAAATTTGACTAGGG
ctgaccctttttttgttttctattttctattttctttttcatcgtttcattgcagAAATTTGACTAGGG
atctgac putative branch site (score: 3)
tttttttgttttctat putative PPT
tttttttgttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgatttttggtcgctaacttgaagggattttttttcaggaatctgaccctttttttgttttctattttctattttctttttcatcgtttcattgcagAAATTTGACTAGGG
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