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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatacctcattttcttcttccacttctgtttcactcattttagttcttttttttaacagtttgttccttgttccagAGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGGTCTGGTCACTCAAAGCACCCACCAAAACCG

Basic information

species Glycine max
transcript GLYMA02G03810.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595695|gb|DB962467.1|DB962467
EST:     GTTTCTACTCAGCAATGCCTCAGCTGCACCATCCACCACTTTACCCGCCA                         AGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGG
genomic: GTTTCTACTCAGCAATGCCTCAGCTGCACCATCCACCACTTTACCCGCCAgtgagtaata ... cttgttccagAGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGG
EST: gi|151396366|gb|EV266243.1|EV266243
EST:     GTTTCTACTCAGCAATGCCTCAGCTGCACCATCCACCACTTTACCCGCCA                         AGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGG
genomic: GTTTCTACTCAGCAATGCCTCAGCTGCACCATCCACCACTTTACCCGCCAgtgagtaata ... cttgttccagAGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctgtttcactcattttagttcttttttttaacagtttgttccttgttccagAGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGGTCTGGTCACTCAAAGCACCCACCAAAACCG
                             ttttaac  putative branch site (score: 2)
 tttgttccttgttcc  putative PPT
 tcattttagttctttt  TA-rich tract