1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacttgatatttgatgcagaattgtaatagttccttttggtctcccagtaattgtcctagtgtttgggttctactgattttttagctttgtgggatgcagAAGTGGAGAGAGAAGAGCCGTGTGAGGCGAGTGATGATGAGAAGCGAAGTGCTGTTACTGCCATGGACAGTATATTTTCTGTGCTAACCCATTACAGTGA
species | Glycine max |
transcript | GLYMA02G02600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTGATCGCGTTTGTTCATTGGAGCAAGTGCTCGAACCTGATGTCAGAG AAGTGGAGAGAGAAGAGCCGTGTGAGGCGAGTGATGATGAGAAGCGAAGTGEST: gi|193388967|gb|FK354818.1|FK354818
genomic: GATTGATCGCGTTTGTTCATTGGAGCAAGTGCTCGAACCTGATGTCAGAGgtttatttct ... tgggatgcagAAGTGGAGAGAGAAGAGCCGTGTGAGGCGAGTGATGATGAGAAGCGAAGTG
EST: GATTGATCGCGTTTGTTCATTGGAGCAAGTGCTCGAACCTGATGTCAGAG AAGTGGAGAGAGAAGAG
genomic: GATTGATCGCGTTTGTTCATTGGAGCAAGTGCTCGAACCTGATGTCAGAGgtttatttct ... tgggatgcagAAGTGGAGAGAGAAGAG
cagtaattgtcctagtgtttgggttctactgattttttagctttgtgggatgcagAAGTGGAGAGAGAAGAGCCGTGTGAGGCGAGTGATGATGAGAAGCGAAGTGCTGTTACTGCCATGGACAGTATATTTTCTGTGCTAACCCATTACAGTGA
tactgat putative branch site (score: 2)
tgatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttgatatttgatgcagaattgtaatagttccttttggtctcccagtaattgtcctagtgtttgggttctactgattttttagctttgtgggatgcagAAGTGGAGAGAGAAGAGCCGTGTGAGGCGAGTGATGATGAGAAGCGAAGTGCTGTTACTGCCATGGACAGTATATTTTCTGTGCTAACCCATTACAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - -tgatgca
- - - - - - - - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctactg