1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgatgttgctctctgtttatccatctcttgtttctctatgcacaatggcttgtcaattactgattgccactgcttgtgttggacttgattggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCT
species | Glycine max |
transcript | GLYMA02G02400.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGAEST: gi|207726195|gb|GD701483.1|GD701483
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG GTTGTGACTTGTAAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGAEST: gi|298164392|gb|HO014037.1|HO014037
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGAEST: gi|298180824|gb|HO022263.1|HO022263
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
atggcttgtcaattactgattgccactgcttgtgttggacttgattggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCT
aatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatgttgctctctgtttatccatctcttgtttctctatgcacaatggcttgtcaattactgattgccactgcttgtgttggacttgattggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCT
- - tgttgct
- - - - - - - - - - -ccatctc
- - - - - - - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - gcttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgttgg