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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgatgttgctctctgtttatccatctcttgtttctctatgcacaatggcttgtcaattactgattgccactgcttgtgttggacttgattggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCT

Basic information

species Glycine max
transcript GLYMA02G02400.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02400.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 3'ss of exon 2
ctga-tgttgctctctgtttatccatctcttgtttctctatgcacaatggctt-gtcaattactgattgccactgcttgtgttggacttgattggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCT-------
 ||| || |   |     |||| | | |  |  ||  ||     || ||  |  |   |||||  |       || ||  |||||  |   || | | |||||  ||       ||||||||| ||||| || |||||||| |||||||| |||||||| || |||||||  ||||| ||||| ||||||||||||||||||       
ttgagtgataaacatgcattatac-tattgtaattgactcactgcattgtttaagatgattaccaagcaatgttgttttggttggcttctctttgga-atagGCGGT-------GAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAGAGGTTGCAACAGGATCCACCTGCAGGCATCAGTGGTGCTCCTCAAGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541678|gb|BU091521.1|BU091521
EST:     TTCTCCTGGGACTGCACCCGTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|192329123|gb|FK019738.1|FK019738
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|192330836|gb|FK021609.1|FK021609
EST:     TTCTCCTGGGACTGCACCCTTCACTCGCAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|207726195|gb|GD701483.1|GD701483
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTAAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298164392|gb|HO014037.1|HO014037
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298180824|gb|HO022263.1|HO022263
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298178672|gb|HO024407.1|HO024407
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|151394718|gb|EV264589.1|EV264589
EST:     GCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAAAGACTCATGAGAGA
genomic: GCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298179938|gb|HO025153.1|HO025153
EST:     ACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: ACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|151405335|gb|EV275149.1|EV275149
EST:     GGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: GGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|254334254|gb|GR849172.1|GR849172
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
EST: gi|298175146|gb|HO014949.1|HO014949
EST:     TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAG                         GTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA
genomic: TTCTCCTGGGACTGCACCCTTCACTCACAAGTCACCAGTCTCTCTCTTAGgttcatcttg ... tggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggcttgtcaattactgattgccactgcttgtgttggacttgattggaatatagGTTGTGACTTGTGAGGATGTCAACTCCTGCAAGGAAGAGACTCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCT
                                                aatata  TA-rich tract