1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctattttgttgaaaagagtaaagatggtctgatgcataaatttgttacttgctttgaaatctggcaaataagttttgtacttttctcctataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG
species | Glycine max |
transcript | GLYMA02G00930.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATEST: gi|19935747|gb|BQ080568.1|BQ080568
genomic: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
EST: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATEST: gi|208060810|gb|GD858720.1|GD858720
genomic: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
EST: CTTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATEST: gi|19935590|gb|BQ080504.1|BQ080504
genomic: C-TTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
EST: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATEST: gi|213611754|gb|DB960654.1|DB960654
genomic: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
EST: TCTTATGGTCGACCTCACTCTCATTCAAGCAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATEST: gi|208139018|gb|GD935600.1|GD935600
genomic: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
EST: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGEST: gi|207689069|gb|GD673422.1|GD673422
genomic: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTG
EST: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTG TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
genomic: TCTTATGGTCGACCTCACTCTCATTCAAGGAGCTGATTCTAAAGGAGCTGgtctctctct ... ataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGAT
ttacttgctttgaaatctggcaaataagttttgtacttttctcctataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG
tacttttctcctat CT-rich tract
aaataagttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctattttgttgaaaagagtaaagatggtctgatgcataaatttgttacttgctttgaaatctggcaaataagttttgtacttttctcctataatgccagTCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - -tgttgaa
- - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - tacttgc