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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttagtgtgttttattttatttattttttgttatcctgttattatttgattggaaataatgttggatgttatctgtttggaatctttttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT

Basic information

species Glycine max
transcript GLYMA02G00750.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590906|gb|DB973717.1|DB973717
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|22541847|gb|BU091690.1|BU091690
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|19347696|gb|BM892484.1|BM892484
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|193383760|gb|FK346867.1|FK346867
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|6566941|gb|AW234572.1|AW234572
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|193410737|gb|FK375898.1|FK375898
EST:     CTCGCCATTTCATTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|254328397|gb|GR835362.1|GR835362
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|4291000|gb|AI437557.1|AI437557
EST:     CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: gi|208218769|gb|GE017081.1|GE017081
EST:     TATCTCCTCATCCTATTGCAG                         GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: TATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgattggaaataatgttggatgttatctgtttggaatctttttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
 atttgat  putative branch site (score: 5)
                                        tctttttgt  putative PPT
           aaataatgtt  TA-rich tract