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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaatatcatgaaaccttaatttgttccaatacatcactctttatatatatctgatgatgataataaaacacacacgcatacacacacacacacatatatatatatatgtatgtttgcttagttggtattatgttgttttcaactttacttttatcagCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAAC

Basic information

species Glycine max
transcript GLYMA01G45070.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 1
gtacgtaatatcatgaaaccttaatttgttccaatacatcactctttatatatatctgatgatgataataaaacacacacgcatacacacacacacacatatatatatatatgtatgtttgcttagttggtattatgttgttttcaactttacttttatcagCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAAC
                                                           | |   |  |   ||     |   || |     |  | ||      ||   ||  |||||||     ||| ||  |    |        |||   ||  |||| ||||||||| |||| ||||| || ||||| ||||||||||| ||| ||||||||||  | ||||| |||||||| |||||||| |||||||||||||||
----------------------------------------------------------gtaagttttctcctactttttca-gtagaagggaaggctcagtagcctagtaattcatgtttgacgttttgatacaagaggg------gttttgtgttcctcagTTTCTTCAAGGAGTGCCCTCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAAC

upper sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ10492 (Selaginella moellendorffii), 3'ss of exon 2
gtacgtaatatcatgaaaccttaatttgttccaatacatcactctttatatatatctgatgatgataataaaacacacacgcatacacacacacacacatatatatatatatgtatgtttgcttagttggtattatgttgttttcaactttacttttatc----agCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAAC
                                                                                            | | | ||   | |   | | | |  | | || |  |   | | | ||  ||     ||  |||| ||    ||||| |||||| |||| || || ||||||||||||||  |  | ||||| ||||| ||||| || || |||||   ||||||||||||||||||||| || 
------------------------------------------------------------------------------------------gta-agagattggttttggtgt-tgttctcgattggaagtcctcaaggtggattttttcttcgttttctcgcgcagCTTGTTCAAGGAGTGCCCGCATCCGGATGACAAGCAGCGGCAGGAGCTCAGCCGGGAGCTCGGATTGGAGCCGCGGCAAGTCAAGTTTTGGTTCCAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgtatgtttgcttagttggtattatgttgttttcaactttacttttatcagCTTCTTCAAGCAGTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAAC
                                        ctttactttt  CT-rich tract
                       tattatgttgtttt  TA-rich tract