Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctatctctttttttccttcctatttccatagatttcaattgctgattaattttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAACCCCATGCCATCCTCTACTACTCCCAGAGAACTTCCAACGGAGGCCTT

Basic information

species Glycine max
transcript GLYMA01G44600.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4303254|gb|AI443450.1|AI443450
EST:     GGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: GGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|6724334|gb|AW308733.1|AW308733
EST:     GGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: GGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|13480608|gb|BG509951.1|BG509951
EST:     CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|298197029|gb|HO041716.1|HO041716
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|192297056|gb|FG990327.1|FG990327
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|193375207|gb|FK342469.1|FK342469
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|254345565|gb|GR851727.1|GR851727
EST:     ATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: ATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|13479195|gb|BG508538.1|BG508538
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|192295796|gb|FG990862.1|FG990862
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|33388659|gb|CA851866.1|CA851866
EST:     CTCCTCTTCTTACTCCTTACNAGGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCCTCTTCTTACTCCTTAC-AAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|298196403|gb|HO041146.1|HO041146
EST:     TCTCCTCTTCTTACTCCTTACGAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|15814078|gb|BI786353.1|BI786353
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|33390375|gb|CA853570.1|CA853570
EST:     GGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: GGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|8284685|gb|BE022227.1|BE022227
EST:     CTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|19935988|gb|BQ080671.1|BQ080671
EST:     GGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: GGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|7638963|gb|AW733295.1|AW733295
EST:     CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|15815611|gb|BI787886.1|BI787886
EST:     CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|192322649|gb|FK014986.1|FK014986
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTGCGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|192324298|gb|FK018274.1|FK018274
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|14989963|gb|BI315636.1|BI315636
EST:     ATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: ATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|18732748|gb|BM527225.1|BM527225
EST:     CTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|15000796|gb|BI321610.1|BI321610
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|7639562|gb|AW733882.1|AW733882
EST:     CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|17400292|gb|BM177074.1|BM177074
EST:     TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: TCTCCTCTTCTTACTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
EST: gi|15815436|gb|BI787711.1|BI787711
EST:     CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAG                         AGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA
genomic: CTCCTTACAAGATGGGCAAATTCAATCTGTCCCATAGgtatctctat ... ttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttccttcctatttccatagatttcaattgctgattaattttgcttgcagAGTTGTTTTGGCACCGCTGACCAGACAGAGGTCTTACGACAACGTCCCACAACCCCATGCCATCCTCTACTACTCCCAGAGAACTTCCAACGGAGGCCTT
                                     gattaat  putative branch site (score: 3)
                                           ttttgctt  CT-rich tract
                                    tgattaatttt  TA-rich tract