1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctatcagatttcatgatatattgtgcatttgtgctgtattgctagaggaagaactaattgttttattcatttggcaactttgttattgcacatgcattagGTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGATTTGGAACATTTTCTTCATCTTCTTGAAGGGAAGGATGAAATGATGGAC
species | Glycine max |
transcript | GLYMA01G44500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTCGCAATCCGATACTGCCGACTCCAACGCCATCTCACTCACTGCTCG GTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGAEST: gi|16996936|gb|BM086308.1|BM086308
genomic: CCTTCGCAATCCGATACTGCCGACTCCAACGCCATCTCACTCACTGCTCGgtaactcctc ... catgcattagGTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGA
EST: CCTTCGCAATCCGATACTGCCGACTCCAACGCCATCTCACTCACTGCTCG GTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGAEST: gi|209727987|gb|BW666707.1|BW666707
genomic: CCTTCGCAATCCGATACTGCCGACTCCAACGCCATCTCACTCACTGCTCGgtaactcctc ... catgcattagGTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGA
EST: CCTTCGCAATCCGATACTGCCGACTCCAACGCCATCTCACTCACTGCTCG GTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGA
genomic: CCTTCGCAATCCGATACTGCCGACTCCAACGCCATCTCACTCACTGCTCGgtaactcctc ... catgcattagGTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGA
aggaagaactaattgttttattcatttggcaactttgttattgcacatgcattagGTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGATTTGGAACATTTTCTTCATCTTCTTGAAGGGAAGGATGAAATGATGGAC
aactaat putative branch site (score: 2)
aactaattgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcagatttcatgatatattgtgcatttgtgctgtattgctagaggaagaactaattgttttattcatttggcaactttgttattgcacatgcattagGTCCGGTGATATGGCTGAGGAGAGGGAGCAGGACACTGTTACACAGGCCGATTTGGAACATTTTCTTCATCTTCTTGAAGGGAAGGATGAAATGATGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - -ttcatga
- - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - -gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca