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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gactttattgttgttatgactgattctgttttctcagaacacggtatgtttgaaacattgactctataatcattggccttttcatttattcaattggcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAACAAAGGTTATATGAAAAGGCAGGCTATTTTCTCTTGCCTCACCTGCACTC

Basic information

species Glycine max
transcript GLYMA01G43520.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43520.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0025g01440.t01 (Vitis vinifera), 3'ss of exon 1
------gactttattgttgttatgactgattctgttttctcagaacacggtatgtttgaaacattgactctataatcattggccttttcatttattcaa-ttggcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAACAAAGGTTATATGAAAAGGCAGGCTATTTTCTCTTGCCTCACCTGCACTC
      || | || ||  | | ||| | |   || | | | |     |  | | |    |||||  |  || |  |  |  | |||||  ||  || || |    ||||||| || || |||||||| |||||||| |||||||| || ||||||| ||| ||||||||||| |||||||| ||||| || ||  | || |||||| 
agcaaggaatgtactg--gctttgattaaaattgctgtgttatcttgcattcttt----aacat-aatcctttggtgttctgtctttttgttcttttaaatccaaagGAAGCAGACTTGGTTTTGGGTGGTGATGAGGGCAAGGAATGCACCTATATCAAGGGTTATATGAAGAGGCAGGCAATTTTTTCATGTTTGACTTGCACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttgaaacattgactctataatcattggccttttcatttattcaattggcagGAAGCTGATTTAGTTTTGGGGGGTGATGATGGCAAGGAGTGTACCTATAACAAAGGTTATATGAAAAGGCAGGCTATTTTCTCTTGCCTCACCTGCACTC
          cattgac  putative branch site (score: 3)
                               ccttttcatttattc  putative PPT
                                 ttttcatttattcaat  TA-rich tract