Sequence
atgc intronic sequence ATGC exonic sequencegtatctatccatgcgttttcccttttcttctctcttatacttcaatatcctcctcactgtttgttctttctcacttctcagTGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGGTAACGCCTTTGACAACATCATTGACGCTAAACGAACTTTGAGGGAAATC
Basic information
| species | Glycine max |
| transcript | GLYMA01G43100.1 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G43100.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 1
----------gtatctatccatgcgttttccctttt-cttctctcttatacttcaatatcctcctcact------gtttgttc--tttctcacttctcagTGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGGTAACGCCTTTGACAACATCATTGACGCTAAACGAACTTTGAGGGAAATC
| | | | | ||||| | ||| | | || | | | || | || || | | | || || ||| |||||||||| || |||| || || || ||||| |||||||| |||||||||||||| || |||||||||| || || || ||| | || || || |||||
tgattcccaggaactcagaaaggtgttttaacatttacatatcagacaagttcctatttgatcaacagaagggaggataacttgattcctttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTAAGAGAAATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151408614|gb|EV278422.1|EV278422EST: TATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTG TGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGG
genomic: TATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatcc ... cacttctcagTGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttctctcttatacttcaatatcctcctcactgtttgttctttctcacttctcagTGCTGCTGTTAATTGCGATACGCACGAGGAAGTTGCCATAAAGAAGATTGGTAACGCCTTTGACAACATCATTGACGCTAAACGAACTTTGAGGGAAATC
ttctcac putative branch site (score: 2)
tatcctcctcactgtt CT-rich tract
ttatacttcaatat TA-rich tract
