1 5' 3' | 2 5' 3' | 3 5' 3' |
gttaacataatattttggtttcatgttttaaagttatgcatgttaactatatatacccaaagaggtgacgtcgatctcacctggtcagataaggttttgttgttgtttaaagttatgtatgtttgaattgttgttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACGAGAGCCGTGTTCTACATTGTGATGCAGTGTCTTGGAGC
species | Glycine max |
transcript | GLYMA01G42950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298194408|gb|HO041056.1|HO041056
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298188096|gb|HO032053.1|HO032053
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|207740733|gb|GD715791.1|GD715791
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|208113766|gb|GD913421.1|GD913421
genomic: TCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCEST: gi|193614264|gb|FK562264.1|FK562264
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|192305303|gb|FG997555.1|FG997555
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298162974|gb|HO011707.1|HO011707
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298167734|gb|HO012997.1|HO012997
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTCTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|192297908|gb|FG988364.1|FG988364
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|207775565|gb|GD749838.1|GD749838
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|151394697|gb|EV264568.1|EV264568
genomic: TCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|208167688|gb|GD963814.1|GD963814
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTEST: gi|208062226|gb|GD855936.1|GD855936
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTT
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATNTCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTEST: gi|207777239|gb|GD748334.1|GD748334
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTT
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|192312379|gb|FK003171.1|FK003171
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|208202537|gb|GD997866.1|GD997866
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: CACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|192312380|gb|FK003172.1|FK003172
genomic: CACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|193545096|gb|FK499445.1|FK499445
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: -TTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|193414940|gb|FK378780.1|FK378780
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TGGTGGCATGAAATACTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|151403754|gb|EV273564.1|EV273564
genomic: TGGTGGCATG--AT-CTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCEST: gi|298171802|gb|HO021394.1|HO021394
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
EST: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAG GTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
genomic: TTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGgttaacataa ... gttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGC
gataaggttttgttgttgtttaaagttatgtatgtttgaattgttgttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACGAGAGCCGTGTTCTACATTGTGATGCAGTGTCTTGGAGC
tttaaagttatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacataatattttggtttcatgttttaaagttatgcatgttaactatatatacccaaagaggtgacgtcgatctcacctggtcagataaggttttgttgttgtttaaagttatgtatgtttgaattgttgttgggacagGTGGGCACATAAATCCGGCAGTGACGTTCGGTTTGTTTCTGGCTAGGAAGCTGTCCCTGACGAGAGCCGTGTTCTACATTGTGATGCAGTGTCTTGGAGC
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