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...cttcgccttttctattagtttggtgatactgatacgtgatgattattggcttctttcaaaatctgaaacctagacttgttgactatcatttcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAAACACCTTGAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCC
species | Glycine max |
transcript | GLYMA01G41600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCG GCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAEST: gi|209699794|gb|BW652487.1|BW652487
genomic: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGgtgaattctc ... tcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAA
EST: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCG GCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAEST: gi|193553645|gb|FK508602.1|FK508602
genomic: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGgtgaattctc ... tcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAA
EST: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCG GCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAEST: gi|21675921|gb|BQ628272.1|BQ628272
genomic: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGgtgaattctc ... tcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTT-AA
EST: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCG GCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAA
genomic: AAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGgtgaattctc ... tcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAA
ttggcttctttcaaaatctgaaacctagacttgttgactatcatttcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAAACACCTTGAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCC
tgttgac putative branch site (score: 3)
tttcattt putative PPT
tttcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcgccttttctattagtttggtgatactgatacgtgatgattattggcttctttcaaaatctgaaacctagacttgttgactatcatttcatttgtagGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAAACACCTTGAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - gcctttt
- - - - - - - - - - - - gatactg
- - - - - - - - - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac