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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctcatttatcatgtatttattagagttgcttcttaatttggtattttattctattctaacgcccttataacttggtgccaacgaaattttttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCAGGGTATCTTCGTGCCTGTTTGAACACAGGGAAGCTTGCCTCCTTGGCAA

Basic information

species Glycine max
transcript GLYMA01G40930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412213|gb|EV282025.1|EV282025
EST:     GGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: GGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|207823267|gb|GD795286.1|GD795286
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|151402601|gb|EV272414.1|EV272414
EST:     CGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: CGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|193408693|gb|FK370401.1|FK370401
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|192300500|gb|FG988857.1|FG988857
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
EST: gi|193328923|gb|FK295167.1|FK295167
EST:     AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAG                         TTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA
genomic: AAAATCGAAATAAAACGTTATTGGGGCAGAAATCAAAACCATAGATAGAGgtacgtacga ... tttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattctattctaacgcccttataacttggtgccaacgaaattttttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCAGGGTATCTTCGTGCCTGTTTGAACACAGGGAAGCTTGCCTCCTTGGCAA
                                          ttttttgcttc  CT-rich tract
                                       aaatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctcatttatcatgtatttattagagttgcttcttaatttggtattttattctattctaacgcccttataacttggtgccaacgaaattttttgcttcagTTATTACTCCCTATAACATGTGGTGGTGATTTGAAGATGGCAGACTTACCAGGGTATCTTCGTGCCTGTTTGAACACAGGGAAGCTTGCCTCCTTGGCAA

- - - - - catgtat
- - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgcc