1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatgaatgtgacgtgtacatatatatttaggcttatcaagaatgaattactaaaaagctcctgtcattgattttgtgttaaaaaaaaaactctccccagAGAAAGTTTGAAGAAGAATCAGAAGAGGTCACTCTTGATGGGAGTGTTGATTTCCATGGACGTCCTGCAATCAGAGCCAAATCTGGCAGATGGGTGGCTG
species | Glycine max |
transcript | GLYMA01G40850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTAATATCATATCACTCATGTCTTACTTAGAGTCTCAGGTCTACAAAGAG AGAAAGTTTGAAGAAGAATCAGAAGAGGTCACTCTTGATGGGAGTGTTGAT
genomic: TTAATATCATATCACTCATGTCTTACTTAGAGTCTCAGGTCTACAAAGAGgtaattatta ... ctctccccagAGAAAGTTTGAAGAAGAATCAGAAGAGGTCACTCTTGATGGGAGTGTTGAT
aattactaaaaagctcctgtcattgattttgtgttaaaaaaaaaactctccccagAGAAAGTTTGAAGAAGAATCAGAAGAGGTCACTCTTGATGGGAGTGTTGATTTCCATGGACGTCCTGCAATCAGAGCCAAATCTGGCAGATGGGTGGCTG
ctctcccc CT-rich tract
attgattttgtgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgaatgtgacgtgtacatatatatttaggcttatcaagaatgaattactaaaaagctcctgtcattgattttgtgttaaaaaaaaaactctccccagAGAAAGTTTGAAGAAGAATCAGAAGAGGTCACTCTTGATGGGAGTGTTGATTTCCATGGACGTCCTGCAATCAGAGCCAAATCTGGCAGATGGGTGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-catgaat
- - - - -tgacgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa