1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatcttttagatcaatctttatttgttgccactttctttctttttcatgttgatgaagcagtggacttatctcttccctatcatttgctgtgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAG
species | Glycine max |
transcript | GLYMA01G39020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTATAAGAGAAATCATTGATCACAGGTCTCTAAGACATEST: gi|19453479|gb|BM954889.1|BM954889
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|11412769|gb|BF424780.1|BF424780
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|14259499|gb|BG882407.1|BG882407
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTCTATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|4291115|gb|AI441715.1|AI441715
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|4285128|gb|AI440867.1|AI440867
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|27424851|gb|CA936371.1|CA936371
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: GCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|18040782|gb|BM309076.1|BM309076
genomic: GCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATEST: gi|4286595|gb|AI441069.1|AI441069
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
EST: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAG ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
genomic: AACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGgttagtgcca ... tgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACAT
catgttgatgaagcagtggacttatctcttccctatcatttgctgtgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAG
tgttgat putative branch site (score: 4)
tatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcttttagatcaatctttatttgttgccactttctttctttttcatgttgatgaagcagtggacttatctcttccctatcatttgctgtgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - tgccact
- - - - - - - - - - - - - - - - - - - - - - - - gttgatg