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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacaaaataagagaaagaagtaagagatgtaacaaaagatggcagggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC

Basic information

species Glycine max
transcript GLYMA01G38750.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g31690.1 (Oryza sativa), 3'ss of exon 1
------aacaaaataagagaaagaagtaagagatgtaaca--aaagatggcagggaaatagaaacaa--aaatagttgtatgaataacaagg-----gtgattgtatac--attcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
          || || ||   || |||| |     |  |   |  |         |  | ||||| |   |||   | |||   ||||   |     ||| | |    |   |  |||| || || || || || || || | |||||| ||||||||||| || ||||| ||||| ||| |||| ||||||||||| || || || || |||||||
gtaagaccttaattaggatttaggagtatgttgcatggcgccatggccaaggccaaggtggaaacgatcgaattactatatatgtaacgccgtgcatgtggtggccggccggtgtagGGCGCCAGCGCGGAGGGCGTGCCGAGGAGGCTTACCTTCGACGAGATTCAGAGTAAGACGTACATGGAGGTGAAGGGAACCGGCACGGCGAACCAGTGCC

upper sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G113349_T01 (Zea mays), 3'ss of exon 1
aacaaaataagagaaagaagtaagagatgtaa-caaaagatggcagggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
   |  |||||| ||    | |  |   | || |  | | |  |  |    |       || |  || |   |||     | |     ||| | |   ||||| ||||| || || ||    || |||||||| |||| |||||| |||||||||||||| ||| |||| |||||||| || || || || || |||||||
gtaagtataagataagcgtgcattatcagcaagcttacgcttacctgtgcctgctcctcaacaacgtcgatcgaa-gctgatgacacgtgtgtgcg--cagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAGACGTACCTGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC

upper sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G175562_T02 (Zea mays), 3'ss of exon 1
--------------------aacaaaataaga-gaaagaagtaagagatgtaacaaa---agatggcagggaaatagaaacaaaaatagttgtatgaata-----acaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
                    | | |  |     |   |       || |    | ||    | |||  | || ||           |   ||| ||  |          | |||  ||| | | | ||||| ||||| || || ||    || |||||||| |||| |||||| ||||||||||| || ||| |||| |||||||| || || || || || |||||||
gtaagcacgcatgcattgttagcgagctcgcttgcctgctcctcaaggtcggccgaagttggttggtggtgacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcgtgcagGGCGCGAGCGCGGAGGGCACGCCCAAGAGGCTGACCTACGACGAGATCCAGAGCAAAACGTACATGGAGGTGAAGGGCACGGGCACGGCGAACCAGTGCC

upper sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G66570.1 (Arabidopsis thaliana), 3'ss of exon 1
aacaaaataagagaaagaagtaagagatgtaacaaaagatggcagggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
||     ||    ||    ||||     |   ||        ||      | | | ||   |   |  | | ||       | |  | || ||     ||||||| ||||| || || | |||||||||  | ||||  || || || ||||||||||||||| |||||||||| ||||||||||| ||||| |||||||
aaaccgctattccaattctgtaatcttcgattcatgtagatacaatcttcttggatcagtgagtttgatttaaagttgcttgtttctcgtgtaatgaaagGGAGCAAGTGCGGAGGGAGCTCCAAAGAGATTGACCTATGATGAGATTCAGAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCC

upper sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0207g00210.t01 (Vitis vinifera), 3'ss of exon 1
aacaaaataagagaaagaagtaagagatgtaacaaaagatggcagggaaatagaaacaaaaatagttg---tatgaataacaagggtgattgtata-cattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
    | ||     |   |  ||       ||  | |   | |    |  ||   ||   |     ||    | |||    ||||    ||  | |    || ||||||| ||||||||||| | ||||||| |||| || | ||| || |||||||| ||||||||| ||||||| |||||||||||||||||||| || ||||
----atatttagcatgcagatattgatcctataagacactagtgctgttattctaatttatgcttttaacatctgatcttcaagaaaaatattttggtttttagGGAGCAAGTGCAGAAGGAGCTCCAAAGCGGCTGACATACGATGAGATCCAGAGTAAGACATACATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGCC

upper sequence: GLYMA01G38750.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g11710.t01 (Vitis vinifera), 3'ss of exon 1
aacaaaataagagaaagaagtaagagatgtaacaaaagatggcagggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacatt---cagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
    || | |  | ||  |   |||  |  |        |   |     | |     |  |  |  ||| | | |    |  | |    |  | | |   ||||||||  |||| || || ||||| ||| ||||||| |  ||||||||||| |||||||||||| |||||||||| ||||| |||||||| || |||||||
---caactcatgggaattaaccagaattagagttttccttccaaaaattacatttgtattagcatgtgtgtaatttggcaatgcgtacatggataattaacagGGAGCAGGTGCTGAGGGAGTTCCGAAGCGGCTAACATATGACGAAATCCAAAGCAAGACATACATGGAAGTGAAAGGAACCGGAACTGCAAACCAGTGCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599060|gb|DB966376.1|DB966376
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209715082|gb|BW677125.1|BW677125
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213617179|gb|DB971298.1|DB971298
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209719491|gb|BW650996.1|BW650996
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|10844128|gb|BF067460.1|BF067460
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209708721|gb|BW657103.1|BW657103
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|14011183|gb|BG726114.1|BG726114
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192295298|gb|FG985952.1|FG985952
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|6134653|gb|AW133046.1|AW133046
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|9203604|gb|BE329828.1|BE329828
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAN
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120533638|gb|EH261771.1|EH261771
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|16996818|gb|BM086190.1|BM086190
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213610882|gb|DB963198.1|DB963198
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213608449|gb|DB970878.1|DB970878
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209701322|gb|BW655917.1|BW655917
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|15288162|gb|BI472053.1|BI472053
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|5606896|gb|AI900994.1|AI900994
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|17519202|gb|BM188244.1|BM188244
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|19347981|gb|BM892513.1|BM892513
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209697002|gb|BW666992.1|BW666992
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7690853|gb|AW758990.1|AW758990
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120492466|gb|EH220633.1|EH220633
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|12497035|gb|BG047364.1|BG047364
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209724765|gb|BW672547.1|BW672547
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298198828|gb|HO042191.1|HO042191
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACAAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120532473|gb|EH260606.1|EH260606
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|17518791|gb|BM187833.1|BM187833
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213614634|gb|DB969536.1|DB969536
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|6482163|gb|AW201434.1|AW201434
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213589260|gb|DB957792.1|DB957792
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209708031|gb|BW662160.1|BW662160
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298186233|gb|HO036866.1|HO036866
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7284150|gb|AW596748.1|AW596748
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298189087|gb|HO037490.1|HO037490
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|15338230|gb|BI498894.1|BI498894
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|26048000|gb|CA784626.1|CA784626
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209712846|gb|BW684203.1|BW684203
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209714545|gb|BW684894.1|BW684894
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192297315|gb|FG992409.1|FG992409
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGGGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192312437|gb|FK003201.1|FK003201
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTCGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298186484|gb|HO037117.1|HO037117
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192309591|gb|FK000211.1|FK000211
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298178829|gb|HO024564.1|HO024564
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192334630|gb|FK025863.1|FK025863
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213598115|gb|DB964146.1|DB964146
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|192294170|gb|FG986259.1|FG986259
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120530363|gb|EH258496.1|EH258496
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209721846|gb|BW666427.1|BW666427
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|7232736|gb|AW568090.1|AW568090
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209704844|gb|BW661674.1|BW661674
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|213613500|gb|DB963244.1|DB963244
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|298180952|gb|HO022391.1|HO022391
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120532403|gb|EH260536.1|EH260536
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|209726262|gb|BW680199.1|BW680199
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|120532548|gb|EH260681.1|EH260681
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
EST: gi|151399518|gb|EV269389.1|EV269389
EST:     CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCT                         GGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG
genomic: CCACCAAAATTGCAGGATTCGCCCTTGCCACCTCAGCTCTCGTTGTTTCTgtatgtctta ... atacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC
                          gaataac  putative branch site (score: 2)
     tagaaacaaaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacaaaataagagaaagaagtaagagatgtaacaaaagatggcagggaaatagaaacaaaaatagttgtatgaataacaagggtgattgtatacattcagGGAGCGAGTGCAGAAGGTGTTCCAAAGAGGCTAACCTTCGACGAAATCCAGAGCAAGACATACTTGGAAGTGAAGGGAACTGGAACTGCTAATCAGTGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
aacaaaa
- -aaaataa
- - - - - -agaaagaa
- - - - - - - - - - - - - - - - - - - - ggcaggg
- - - - - - - - - - - - - - - - - - - - - - - - aatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg