1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcctttcctttttttttcctgtgcctgagctgaaacaatgatttcagctatggcttacttatgccttattcttcttaatttataaatttttttgcacagAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAA
species | Glycine max |
transcript | GLYMA01G38460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAAATCTCCAATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAA AACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCEST: gi|192298366|gb|FG992126.1|FG992126
genomic: ACCAAATCTCCAATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAAgtgagtactt ... ttttgcacagAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGC
EST: AATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAA AACAACACAGATCTTCGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGC
genomic: AATTCTCAGTCGTTCACATTCTCGTTCTCAGACCATGAAgtgagtactt ... ttttgcacagAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGC
cagctatggcttacttatgccttattcttcttaatttataaatttttttgcacagAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAA
tcttaat putative branch site (score: 3)
tttttttgc putative PPT
ttatgccttattcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctttcctttttttttcctgtgcctgagctgaaacaatgatttcagctatggcttacttatgccttattcttcttaatttataaatttttttgcacagAACAACACAGATCTTTGGTGTGTCTCTCTCACTCATTCTTATCAACCTGGCTGCTATAATGGAGCGTGCAGATGAAAACCTTCTTCCATCTGTCTACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- cctttcc
- - - - - - - - - cctgtgc
- - - - - - - - - - - - - - agctgaa
- - - - - - - - - - - - - - - - - - - - - - - agctatg