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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgtgttgtttttcttattttactttttatggggttattcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA

Basic information

species Glycine max
transcript GLYMA01G38290.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g10140.1 (Oryza sativa), 3'ss of exon 1
-----------------------------gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgtgttgtttttcttattttactttttatggggttattcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
                              ||     |  | | | ||   |  |      || |||     |    ||      ||     ||    ||   | |||  | ||||||| ||||| |||||||| || ||||| || ||||| ||| |||| |||||| | ||||| || || || |||||||||||||| ||| | ||||||||
gtgactgactagttaaccgtaccggttgcttaatttgactagagttatgcgtgatggcgagatgatcgatggcgacggtgaccgatcgagcgtt--cgttcgcgtggtggtgcagATCCTGATGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACAGGTTCGTTTGCGAGATCTGCAACAAGGGGTTCCAGCGCGACCAGAA

upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G171073_T02 (Zea mays), 3'ss of exon 1
-----------------------------------------gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgt-------gttgtttttcttattttactttttatgg-ggttattcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
                                          ||        |  |   | |   | |     ||    | |   ||||       | ||            |     |  ||| |||    ||||||| || || |||||||| || ||||| || ||||| ||| |||| |||||||| |||||||| || || |||||||||||||| ||| ||||||||||
gtgattgatatttttttgttttgttttgtttttagtcgtttatagtggtccgaggtgtgtgtgcgtgccggggatagctagctctttgtcgtgatcgatggcgacggcgccgtggccgtggtggtggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGGGACCAGAA

upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g12220.t01 (Vitis vinifera), 3'ss of exon 1
---gtaccacaaaa----aaattcatttt---ttttcaatcaatcatcatcatcttgtgttgtttttcttattttactttttatg-gggttattcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
     |  | ||||    ||||||| | |   | ||   | |||  |   | ||       |        |       || | |  || || | ||||||||||||| |||||||| ||| |||| || || ||||| ||||| |||||||| ||||| || || || |||||||| ||||| ||  | ||||||||
gtaagataagaaaaccctaaattcaatgtaaatcttaggtaaattctttccctcccaatacgaagagagaagaccgtgttgtgtttggattttgcagATCCGGATGCGGAGGTGATCGCTTTGTCACCCAAAACCCTAATGGCAACGAACCGGTTCGTCTGCGAGATCTGCAACAAAGGGTTCCAACGCGACCAGAA

upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S43_228V6.1 (Physcomitrella patens), 3'ss of exon 1
---gtaccacaaaaaaattcattttttttca----atcaatcatcatc---atcttgtgttgtttttcttattttactttttatggggttatt----cagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
      |  |   |   ||  ||     ||     ||||    |  |       |||||  |||     |        | |||   | || |     |||| ||||| || |||||||| ||  |||| || |||||  ||||||| ||||| || |||||||| |||||||| ||||||||||||||| | || || ||
acttctctccgtcatggttttttgagggtcgcgagatcagatgttgtataggatttgtgaggttaaatatgccaacggtgttagatgattgtatacgcagACCCGGAAGCTGAGGTGATAGCGTTGTCACCAAAGACATTGATGGCAACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGGTTTCAGCGAGATCAAAA

upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S165_3V6.1 (Physcomitrella patens), 3'ss of exon 2
-----gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgtgttgtttttcttattttactttt-tatggggttatt--------cagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
      ||  |     ||| || |    ||  |     |    |   | | | ||  |   |   || |  |     ||  || | |||        |||| ||||| || |||||||| ||  |||| || || ||  ||||||||||||| || |||||||| |||||||| |||||||| |||||| | ||||| ||
tggtcataagattctgaaagtcgtgagcttggatcttgtgtaaagtttgtggagtgatgagttcaatctggcaaccgtactggatgatttgaatacgcagACCCGGAAGCCGAGGTGATCGCGTTGTCACCAAAAACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGTTTTCAGCGCGACCAAAA

upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S63_51V6.1 (Physcomitrella patens), 3'ss of exon 1
----------gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgtgttgtttttcttattttactttt--tatggggtt----attcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
                |       |   |  ||||| |||   || | | |    ||||  | |    | |   | |      ||| || ||    |  |||| ||||| || |||||||| ||| | || || |||||  ||||||||||||| || |||||||| |||||||| ||||||||||||||| | || || ||
tttactccctcctgttccctttggtcagtaatttttaaat--gtcgttagcggactgtgaagatgagttcaaggtgccaacgatattggatttaatacgcagACCCGGAAGCCGAGGTGATAGCTTTATCACCAAAGACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGGTTTCAGCGAGATCAAAA

upper sequence: GLYMA01G38290.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S125_69V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gtaccacaaaaaaattcattttttttcaatcaatcatcatcatcttgt-gttgtttttcttattttactttt--tatggggtt----attcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
       |           |||   | |   |  ||    |  | |  ||| ||  | ||  ||  || |||| |  ||  ||| || ||    |  |||| ||||| || |||||||| ||| |||| || |||||  ||||||||||||| || |||||||| |||||||| ||||||||||||||| | || || ||
ccttcgtgattagtctgcgaatgtctctagctcgaacgtgtttttaagatcgtgaaggtgaattaattttttttccattggtattggattgaatacgcagACCCGGAAGCGGAGGTGATAGCTTTGTCACCAAAGACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGGTTTCAGCGAGATCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatcatcatcttgtgttgtttttcttattttactttttatggggttattcagATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAA
                tgttgtttttcttatt  TA-rich tract