1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagcaattgttggtgtctgaaaaattgaaaaggtgacattgtgatacataggcttattttgttatccttctgagtggagagttatttggattttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGTCGTTGAAAAGCATAGTAAGGGAACTAAAGGAGATGAGGGATGGGATTGG
species | Glycine max |
transcript | GLYMA01G37940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAG GTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGTEST: gi|213595159|gb|DB972093.1|DB972093
genomic: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAGgtcttggttc ... ttttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGT
EST: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAG GTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGTEST: gi|208262797|gb|GE061965.1|GE061965
genomic: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAGgtcttggttc ... ttttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGT
EST: ATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAG GTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGTEST: gi|298185916|gb|HO031077.1|HO031077
genomic: ATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAGgtcttggttc ... ttttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGT
EST: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAG GTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATACTGTGGGAAAATGTEST: gi|5342450|gb|AI794734.1|AI794734
genomic: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAGgtcttggttc ... ttttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGT
EST: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAG GTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGT
genomic: TAGATGATTTGGTGCGATTCGTCTTTTCCTTGTTCGCTTCAATTTTTCAGgtcttggttc ... ttttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGT
acataggcttattttgttatccttctgagtggagagttatttggattttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGTCGTTGAAAAGCATAGTAAGGGAACTAAAGGAGATGAGGGATGGGATTGG
ttttgttt CT-rich tract
ttattttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaattgttggtgtctgaaaaattgaaaaggtgacattgtgatacataggcttattttgttatccttctgagtggagagttatttggattttgtttagGTGATTGCAGTTTTGTGGTGTAAGGAAGATTGATATGCTGTGGGAAAATGTCGTTGAAAAGCATAGTAAGGGAACTAAAGGAGATGAGGGATGGGATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - gttggtg
- - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagag