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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccataccctttattcttcccctcttccccatcattcgctccctgtaaaaccctaatagatgcaatctcgcacgatccaatttcactttttattgcttaatttgatttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTG

Basic information

species Glycine max
transcript GLYMA01G37580.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208203789|gb|GE004816.1|GE004816
EST:     ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccatacc ... ttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
EST: gi|193616997|gb|FK571639.1|FK571639
EST:     ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccatacc ... ttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
EST: gi|213603715|gb|DB966829.1|DB966829
EST:     ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
genomic: ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccatacc ... ttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
EST: gi|193642022|gb|FK593632.1|FK593632
EST:     ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccatacc ... ttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
EST: gi|298189145|gb|HO037548.1|HO037548
EST:     ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
genomic: ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccatacc ... ttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA
EST: gi|193633319|gb|FK582891.1|FK582891
EST:     ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAG                         CAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACCGATGAA
genomic: ATTTGGCCATTCTCATGCTCTCCGCTTTCGCTATTTTCTTCACTCTTCAGgtaccatacc ... ttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatctcgcacgatccaatttcactttttattgcttaatttgatttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTG
                                       tttgatttcttttt  CT-rich tract
                         tttttattgcttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccataccctttattcttcccctcttccccatcattcgctccctgtaaaaccctaatagatgcaatctcgcacgatccaatttcactttttattgcttaatttgatttctttttagCAAGATGGCGGTATTTCGTTCAAAGACGCATGGATGCACCTAACTGATGAATATCCAATCAAATATGAAGCCGAACGCCTTCCGCCGCCGCTCGTCGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC