Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcttctcttctcttgaaaagcatacttaattgtttgtttgtactgcatactcatgctctgcctcattttcattgatattccgaaagagaatccaatccaattattgtgggttctgtttctgtgttcttattgtgttgtttatcagGTACCTAGATATTAATTCCGCAGCATGGTCTGGACTCGAGGAAACTGCTGGCTTTTCTTCGGCTTCACGTCACGTCGGTCCG

Basic information

species Glycine max
transcript GLYMA01G37420.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611814|gb|DB964790.1|DB964790
EST:     CCCAACCTTTGGGTCCATCACAACTCCGGTTTGCTCCGCCCCGTTTTAAA                         GTACCTAGATATTAATTCCGCAGCATGGTCTGGACTCGAGGAAACTGCTGG
genomic: CCCAACCTTTGGGTCCATCACAACTCCGGTTTGCTCCGCCCCGTTTTAAAgtatctcttc ... tgtttatcagGTACCTAGATATTAATTCCGCAGCATGGTCTGGACTCGAGGAAACTGCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaatccaattattgtgggttctgtttctgtgttcttattgtgttgtttatcagGTACCTAGATATTAATTCCGCAGCATGGTCTGGACTCGAGGAAACTGCTGGCTTTTCTTCGGCTTCACGTCACGTCGGTCCG
        aattattgt  TA-rich tract