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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttaataaattatcactttctcttccctctctctctctctctctctctctctctctatatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatatattgttacaagggatattcatgtcatgtattacatttctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGATGAATTTGATACCTGCGTGAATGAAGAAAGGCCTATAAATCCCAAGGAC

Basic information

species Glycine max
transcript GLYMA01G37360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197845|gb|HO039384.1|HO039384
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298184592|gb|HO029805.1|HO029805
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298175182|gb|HO014985.1|HO014985
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298197732|gb|HO045211.1|HO045211
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298163484|gb|HO012217.1|HO012217
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|208050692|gb|GD848561.1|GD848561
EST:     TTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: TTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298176803|gb|HO023276.1|HO023276
EST:     GGGTTTGTTCCCGTCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|151396245|gb|EV266122.1|EV266122
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|209696524|gb|BW672839.1|BW672839
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298181079|gb|HO022518.1|HO022518
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|151396015|gb|EV265892.1|EV265892
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298169316|gb|HO020676.1|HO020676
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298171711|gb|HO021303.1|HO021303
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298179760|gb|HO024975.1|HO024975
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298190002|gb|HO032123.1|HO032123
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298171512|gb|HO016544.1|HO016544
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|11688030|gb|BF595706.1|BF595706
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|208195207|gb|GD988980.1|GD988980
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298170156|gb|HO018780.1|HO018780
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|151398990|gb|EV268861.1|EV268861
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298189563|gb|HO037966.1|HO037966
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCCG                         GTTTTACAATTATGGTATTGGAATACACTTGATCG
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCG
EST: gi|298183829|gb|HO029042.1|HO029042
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|208204779|gb|GE005680.1|GE005680
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|151393466|gb|EV263341.1|EV263341
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298178113|gb|HO027496.1|HO027496
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|192325713|gb|FK015070.1|FK015070
EST:     GGGTTTGTTCCCACCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298179747|gb|HO024962.1|HO024962
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
EST: gi|298170749|gb|HO015725.1|HO015725
EST:     GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTG                         GTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA
genomic: GGGTTTGTTCCCATCAAACGCCCTTCTTCTTTCAAGTTCACTGGAGCCTGgttagcttaa ... ctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatattgttacaagggatattcatgtcatgtattacatttctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGATGAATTTGATACCTGCGTGAATGAAGAAAGGCCTATAAATCCCAAGGAC
                                     ttacatttcttttt  CT-rich tract
                                   tattacatttcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagcttaataaattatcactttctcttccctctctctctctctctctctctctctctctatatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatatattgttacaagggatattcatgtcatgtattacatttctttttgcagGTTTTACAATTATGGTATTGGAATACACTTGATCGAGAATCCCAACATTGATGAATTTGATACCTGCGTGAATGAAGAAAGGCCTATAAATCCCAAGGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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