1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgttctttctttcgcttgttacccattctctcttccttcttcttctgttcttcattcattcattattattgttattttgtggcgcagATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATCGGGTCCTCAGGTGAAGATCTGAGGCTGTTGGTGTCTCTTTTCTTTTCTC
species | Glycine max |
transcript | GLYMA01G36880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCCCCCTTTCTCCCACACTATCTCTTTCCGCATTTTCCCAATTAGG ATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATCEST: gi|298183384|gb|HO028597.1|HO028597
genomic: ATTTCCCCCCTTTCTCCCACACTATCTCTTTCCGCATTTTCCCAATTAGGgtttgttctt ... tgtggcgcagATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATC
EST: ATTTCCCCCCTTTCTCCCACACTATCTCTTTCCGCATTTTCCCAATTAGG ATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATCEST: gi|37995833|gb|CF807422.1|CF807422
genomic: ATTTCCCCCCTTTCTCCCACACTATCTCTTTCCGCATTTTCCCAATTAGGgtttgttctt ... tgtggcgcagATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATC
EST: ATTTCCCCCCTTTCTCCCACACTATCTCTTTCCGCATTTTCCCAATTAGG ATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATC
genomic: ATTTCCCCCCTTTCTCCCACACTATCTCTTTCCGCATTTTCCCAATTAGGgtttgttctt ... tgtggcgcagATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATC
ttccttcttcttctgttcttcattcattcattattattgttattttgtggcgcagATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATCGGGTCCTCAGGTGAAGATCTGAGGCTGTTGGTGTCTCTTTTCTTTTCTC
ttatttt CT-rich tract
ttcattcattcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttctttctttcgcttgttacccattctctcttccttcttcttctgttcttcattcattcattattattgttattttgtggcgcagATGTGTCATTGAGACAGAAGAAGAAGAAGAAATTGGAGGGGGTGTGTGATCGGGTCCTCAGGTGAAGATCTGAGGCTGTTGGTGTCTCTTTTCTTTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT