1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aagttgaggggttggtctgatttgttgttgtgatcatgatgggtgtttattggaattctcttgtgtactcttttcctcacccatttgaaattttcttcagTGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTG
species | Glycine max |
transcript | GLYMA01G36170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTGGGACG TGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCEST: gi|19268818|gb|BM885074.1|BM885074
genomic: TCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTGGGACGgtatgtatgc ... ttttcttcagTGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTC
EST: TCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTGGGACG TGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCEST: gi|192334105|gb|FK026262.1|FK026262
genomic: TCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTGGGACGgtatgtatgc ... ttttcttcagTGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTC
EST: TCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTGGGACG TGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTC
genomic: TCATCTTGGTATCCATAGCACTCGAAAAGAGTCTCCACAAAGTTGGGACGgtatgtatgc ... ttttcttcagTGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTC
tttattggaattctcttgtgtactcttttcctcacccatttgaaattttcttcagTGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTG
tcctcac putative branch site (score: 2)
ttttcttc putative PPT
atttgaaattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttgaggggttggtctgatttgttgttgtgatcatgatgggtgtttattggaattctcttgtgtactcttttcctcacccatttgaaattttcttcagTGGCTTGGACAAAAGAAAAAGAAGGCTTTGCTTGAAGCTCTGGAGAAGGTCAAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - gggttgg
- - - - - - - - - - - -gttgttg
- - - - - - - - - - - - - - - - - - - - gggtgtt