1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaggatttaagcacatttgatggaaaatatagaaactgcatgcatattttttcctttctttttattataatattaaaatttaatggtatatttgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCAGCAATAGCAGGGAAGAATTTGTACATTAGATTCAGTTGCACTACAGGGGATGCCATGGGGATG
species | Glycine max |
transcript | GLYMA01G36080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACCTGGAAGACCCTCTCAATTTCGATTCCCTTGCCGTCGTTTTCAACAA GTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCAGCAATAGCAGGGAA
genomic: TACCTGGAAGACCCTCTCAATTTCGATTCCCTTGCCGTCGTTTTCAACAAgtgagtttgt ... atttgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCAGCAATAGCAGGGAA
tattttttcctttctttttattataatattaaaatttaatggtatatttgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCAGCAATAGCAGGGAAGAATTTGTACATTAGATTCAGTTGCACTACAGGGGATGCCATGGGGATG
atttaat putative branch site (score: 4)
tttctttttattataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaggatttaagcacatttgatggaaaatatagaaactgcatgcatattttttcctttctttttattataatattaaaatttaatggtatatttgtgcagGTCAAGCAGGTTTGCGAGATTGCAAGATATTAAGGCAGCAATAGCAGGGAAGAATTTGTACATTAGATTCAGTTGCACTACAGGGGATGCCATGGGGATG
- - - - - - - - -ttgatgg
- - - - - - - - - - - - - - - - - aactgca