1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcctacaatgattcattgcttggtgtaattgttaggaatattgagtatcttaagttctgacctcaaattctaatttgtagtttttctcctgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTT
species | Glycine max |
transcript | GLYMA01G31270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|19054282|gb|BM732949.1|BM732949
genomic: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: CAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|13788286|gb|BG650878.1|BG650878
genomic: CAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|208182160|gb|GD980607.1|GD980607
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|17022544|gb|BM093578.1|BM093578
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: CTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|21888286|gb|BQ741499.1|BQ741499
genomic: CTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: GAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|213604822|gb|DB956135.1|DB956135
genomic: GAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|8827979|gb|BE211709.1|BE211709
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: GCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298169248|gb|HO020608.1|HO020608
genomic: GCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298182749|gb|HO031484.1|HO031484
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|26268188|gb|CA819251.1|CA819251
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|18041325|gb|BM309619.1|BM309619
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|19053906|gb|BM732573.1|BM732573
genomic: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: CGCAGAGGAGCAGAAGCCTAAGCCTCAAACAAG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|209720298|gb|BW669258.1|BW669258
genomic: CGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|8827265|gb|BE210995.1|BE210995
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298188320|gb|HO035013.1|HO035013
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298188025|gb|HO031982.1|HO031982
genomic: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|192298439|gb|FG988455.1|FG988455
genomic: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|14259674|gb|BG882582.1|BG882582
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: GCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|192332454|gb|FK024215.1|FK024215
genomic: GCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298190414|gb|HO032535.1|HO032535
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|213618374|gb|DB969372.1|DB969372
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|13481264|gb|BG510607.1|BG510607
genomic: AGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: CAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|15813058|gb|BI785333.1|BI785333
genomic: CAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|192298477|gb|FG988478.1|FG988478
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298174877|gb|HO014794.1|HO014794
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298194963|gb|HO043435.1|HO043435
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|16348683|gb|BI974269.1|BI974269
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGEST: gi|298197068|gb|HO041811.1|HO041811
genomic: TTCTTCACCCGCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
EST: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATG GCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
genomic: GCTCAGACGCAGAGGAGCAGAAGCCTAAGCCTCAAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGG
gtatcttaagttctgacctcaaattctaatttgtagtttttctcctgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTT
ttctaat putative branch site (score: 2)
tttttctcctgtattt putative PPT
aaattctaatttgtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcctacaatgattcattgcttggtgtaattgttaggaatattgagtatcttaagttctgacctcaaattctaatttgtagtttttctcctgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- cctacaa
- - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaaa