1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgatcctttataagatgtgtggtgtggtgtctgctgtggaagaaaaaacatgttcttcaattcgaacagaatgttgattccacctttatctattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAG
species | Glycine max |
transcript | GLYMA01G27840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGEST: gi|27426139|gb|CA937659.1|CA937659
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGEST: gi|213599235|gb|DB960003.1|DB960003
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGEST: gi|16105129|gb|BI892869.1|BI892869
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGEST: gi|254334106|gb|GR849024.1|GR849024
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGEST: gi|209712319|gb|BW668507.1|BW668507
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCG
aaacatgttcttcaattcgaacagaatgttgattccacctttatctattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAG
tgttgat putative branch site (score: 4)
ttccacctttatct CT-rich tract
tttatctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatcctttataagatgtgtggtgtggtgtctgctgtggaagaaaaaacatgttcttcaattcgaacagaatgttgattccacctttatctattttgcagATATGTCTCAGGATACAAAAACCGTTTCCAGAATTTTATAAAATACCTTCGTGAAATGGGAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - ctgctgt
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacagaa