Sequence
atgc intronic sequence ATGC exonic sequence...gaaatatgttggtaatctacctcagcatgcatttctacattagatcttatcatgccactttcctaaagacgtaggcttaacaaaattcaattcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAA
Basic information
species | Glycine max |
transcript | GLYMA01G26650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G26650.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g63160.1 (Oryza sativa), 3'ss of exon 1
gaaatatgttggtaatctacctca-gcatgcatttctacattagatcttatcatgccactttcctaaagacgtaggcttaac-aaaattcaattcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAA
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gtagcattatgggcatgaacattgcgcgttcagtctgttgtgtagtttcgt--tgcatctctgtaaaacttgcttgttaaattattattgctgtttctgcagAGGAGGAAGACCGCATTATAATGGCTGCTCATGCAATCCATGGAAACAAGTGGGCGGCTATTGCAAAGCTTTTGGTTGGGAGAACCGATAATGCAATCAA
upper sequence: GLYMA01G26650.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv08s0007g01540.t01 (Vitis vinifera), 3'ss of exon 1
---gaaatatgttggtaatctacctcagcatgcatttctacattagatcttatcatgccactttcctaaagacgtaggcttaacaaaattcaattcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAA
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gtttattcacatttgtg-tgcgtgcaaaaagttgtcagtgtgtcagtctttgaactttcaatggtgcaaat-catggttcttaatgaactgagttgttg-cagATGAGGAGGATCGTATCATAGTTGCTGCACATGCAATCCATGGAAACAAATGGGCATCAATTGCAAGGCTTCTTCAAGGGAGAACAGATAATGCAATTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213603552|gb|DB962698.1|DB962698EST: CCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCG ATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAAT
genomic: CCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatc ... ttcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttatcatgccactttcctaaagacgtaggcttaacaaaattcaattcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAA
ttcttttc CT-rich tract
ttaacaaaattcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaatatgttggtaatctacctcagcatgcatttctacattagatcttatcatgccactttcctaaagacgtaggcttaacaaaattcaattcttttcagATGAGGAGGACCGGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -gttggta
- - - - - - - - ctacctc
- - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - ctacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa