1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttctttttttcttttcaactactgaagtgaacccttttatttctatattttaaattcgtatttgctttcgtttcaatttctgcggtgttgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG
species | Glycine max |
transcript | GLYMA01G25940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|24206299|gb|BU965552.1|BU965552
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|9564578|gb|BE474087.1|BE474087
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: GCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|213598011|gb|DB972199.1|DB972199
genomic: GCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|7924388|gb|AW830414.1|AW830414
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: AGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|21602716|gb|BQ613047.1|BQ613047
genomic: AGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|120494647|gb|EH222814.1|EH222814
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: GAGTCGCCAGCGCAGCCCCGAAACCTAGT-C- -----CA-TTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|14258901|gb|BG881809.1|BG881809
genomic: GAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: GCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|4313519|gb|AI460638.1|AI460638
genomic: GCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|6073037|gb|AW102424.1|AW102424
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|7925135|gb|AW831161.1|AW831161
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: GTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|19269188|gb|BM885444.1|BM885444
genomic: GTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGT-C- -----CA-TTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|4397406|gb|AI496403.1|AI496403
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|21889053|gb|BQ742266.1|BQ742266
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|19052912|gb|BM731579.1|BM731579
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|20448816|gb|BQ252940.1|BQ252940
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|192316846|gb|FK010833.1|FK010833
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|192326825|gb|FK018922.1|FK018922
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|21888974|gb|BQ742187.1|BQ742187
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTEST: gi|23735184|gb|BU765862.1|BU765862
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
EST: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCA GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
genomic: TCGCAGCCTCGAAACCCTGAGTCGCCAGCGCAGCCCCGAAACCTAGTCCAgtaagtattt ... tgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTT
tatattttaaattcgtatttgctttcgtttcaatttctgcggtgttgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG
tttaaattcgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctttttttcttttcaactactgaagtgaacccttttatttctatattttaaattcgtatttgctttcgtttcaatttctgcggtgttgggtataagGTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG
- - - - - - - - - -actactg
- - - - - - - - - - - - - -agtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgc