Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcaaattatttttctgggaaacttttacagagattccaaatttggcatcaaatttacttgaggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG

Basic information

species Glycine max
transcript GLYMA01G23210.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G23210.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G088397_T01 (Zea mays), 3'ss of exon 4
gtat-tgcaaattatttttctggga----aacttttacagaga-ttccaaatttggcatcaaatttacttgaggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG
||   |||| ||| | | |||   |    |  |  |  ||| | ||||||       |    |  || ||      | |   ||| | || ||||||| ||||| |||||  | |||| ||| ||||| |||||||||||| | || || ||||||||||| |||||||| || 
gtgggtgcacattttctatcttaaatgtcagatcatgtagaaacttccaacaccaaaagacgaactatttatctataatacttttgttttgcagCTGATGAGATTAAAGAGTTGTGGGAAGAATATGAGAACAATTCTTCTATTGAAGCCAATCTTGTAAAAGATTTTGATAAA

upper sequence: GLYMA01G23210.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 5
----gtattgcaaattatttttctgggaaactt-ttacagagattccaaatttggcatcaaatttacttga-ggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG
        |     ||  |  | ||| | ||   ||| |    ||     |||||||  ||| | | |    ||  | ||| || |  || ||| ||||||| | |||||||||||||  ||||||||||| || ||||| |||||||| ||||||||||| |||||||| || 
gtactcgcttttgcttgctactttggaagacgagttaaatgtgttatttttttggcagtaaactaagtaattggatattttattatc-ttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA

upper sequence: GLYMA01G23210.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 10
----gtattgcaaattatttttctgggaaacttttacagagattccaaatttggcatcaaatttacttga-ggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG
      | |     ||  |  | ||| | ||  ||| |   |||     |||||||  ||| | | |    ||  | ||| || |  || ||| ||||||| | |||||||||||||  ||||||||||| || ||||| |||||||| ||||||||||| |||||||| || 
gtgctcacttttgcttgctactgtggaagacagttaaatgtattatttttttggcagtaaactaagtaattggatattttattatc-ttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA

upper sequence: GLYMA01G23210.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g02430.t01 (Vitis vinifera), 3'ss of exon 4
----gtattgcaaattatttttctgggaaactt--ttacagagattccaaatttggcatcaaatttacttga-ggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG
      | |     ||  |  | ||| | ||    ||| |    ||     |||||||  ||| | | |    ||  | ||| || |  || ||||||| |||||||||||||| ||||  ||||||||||| || ||||| |||||||| ||||||||||| ||||||||||| 
gtactcacttttgcttgctactgtggaagacagaattaaaattgttatttttttggcagtaaactaagtaattggatattttattatc-ttgcagCTGACGAGATCAAAGAACTATGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531682|gb|EH259815.1|EH259815
EST:     GCAAAATG-GTGAACTTCTCGTTGGAGGGATAAGAG                         CTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAG
genomic: GCAAAATGTGTGAACTTCTCGGTGGAGGGATAAGAGgtattgcaaa ... tttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagattccaaatttggcatcaaatttacttgaggccactttgtttttattacagCTGAAGAGATCAAAGAACTTTGGGCAGAGTATGAAAACAATTCTTCTTTAGAGGCAAATCTTGTAAAGGATTTTGACAAG
                                      ctttgttttt  CT-rich tract
                                     actttgtttttatta  TA-rich tract