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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaccatgtggattattgcagccttgaattttaccacctaaacatgttttctatctcgggttggattggtggagtgatgcttttgttttttgtgttgtagTGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAA

Basic information

species Glycine max
transcript GLYMA01G22680.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708362|gb|BW683952.1|BW683952
EST:     CATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATG                         TGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTC
genomic: CATTCTCTACAACATCAACACCGAAGAGTCCAGTATTGGCCTCAGAAATGgtattcttct ... tgtgttgtagTGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttctatctcgggttggattggtggagtgatgcttttgttttttgtgttgtagTGCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAA
                                tgcttttgtttttt  CT-rich tract
                                   ttttgtttttt  TA-rich tract