1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttatggaaccaagttatatataaactcctttaattttcctgggtagtactttgttcgaagattaggtgactgactgatgttttcacctctcgtgctagAATGCTCCTGCTGGGATCAGAACTGAAGAA
species | Glycine max |
transcript | GLYMA01G19820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAG AATGCTCCTGCTGGGATCAGAACTGAAGAAEST: gi|7924144|gb|AW830170.1|AW830170
genomic: GCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAGgttcgttcag ... ctcgtgctagAATGCTCCTGCTGGGATCAGAACTGAAGAA
EST: GCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAG AATGCTCCTGCTGGGATCAGAACTGAAGAAEST: gi|10845693|gb|BF071169.1|BF071169
genomic: GCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAGgttcgttcag ... ctcgtgctagAATGCTCCTGCTGGGATCAGAACTGAAGAA
EST: GCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAG AATGCTCCTGCTGGGATCAGAACTGAAGAA
genomic: GCGCTGCTTTCGCTGATATGCAGCAGCAGCTGGATCATTGCTTGTTCAAGgttcgttcag ... ctcgtgctagAATGCTCCTGCTGGGATCAGAACTGAAGAA
tagtactttgttcgaagattaggtgactgactgatgttttcacctctcgtgctagAATGCTCCTGCTGGGATCAGAACTGAAGAA
tgttttcacctctc CT-rich tract
aagatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttatggaaccaagttatatataaactcctttaattttcctgggtagtactttgttcgaagattaggtgactgactgatgttttcacctctcgtgctagAATGCTCCTGCTGGGATCAGAACTGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - -aaactcc
- - - - - - - - - - - - - - - - - - tttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatg