1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgcatagtgcatgccagtaatctgtgctatgaactgtttacaaaatacaaatagataatattttgatctgtgctctgaaacttaatgtttattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTGTGGAAGAAAGGAACCTCCTCTCAGTGGGATACAAAAATGTGATTGGTGC
species | Glycine max |
transcript | GLYMA01G07070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCCAGGTTTACTTGGCCAAGCTTGTCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTGEST: gi|37996365|gb|CF807954.1|CF807954
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTG
EST: CCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTGEST: gi|18735497|gb|BM528797.1|BM528797
genomic: CCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTG
EST: AGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTG
genomic: AGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTG
atacaaatagataatattttgatctgtgctctgaaacttaatgtttattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTGTGGAAGAAAGGAACCTCCTCTCAGTGGGATACAAAAATGTGATTGGTGC
acttaat putative branch site (score: 4)
aatagataatattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatagtgcatgccagtaatctgtgctatgaactgtttacaaaatacaaatagataatattttgatctgtgctctgaaacttaatgtttattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTAACTGTGGAAGAAAGGAACCTCCTCTCAGTGGGATACAAAAATGTGATTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
atgcata
- - - - - catgcca
- - - - - - - - - - -tctgtgc
- - - - - - - - - - - - - - tatgaac