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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaccgaatccgctcagaaattctcgaattcgcggggaatttcgaaatgccgctactaattctcgctatgtttttttgttgatttttttttttttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA

Basic information

species Glycine max
transcript GLYMA01G05170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179789|gb|HO025004.1|HO025004
EST:     GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|19268926|gb|BM885182.1|BM885182
EST:     CAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: CAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|151396162|gb|EV266039.1|EV266039
EST:     GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|254325032|gb|GR834457.1|GR834457
EST:     GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|254321435|gb|GR824752.1|GR824752
EST:     GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|298191399|gb|HO038878.1|HO038878
EST:     GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
EST: gi|6482110|gb|AW201381.1|AW201381
EST:     GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGT                         GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA
genomic: GCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTgtaagaaacc ... ttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgctactaattctcgctatgtttttttgttgatttttttttttttggttttagGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA
                    tgtttttttgttgatt  CT-rich tract
                  tatgtttttttgttga  TA-rich tract