1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaattgatttccaccaatctctttctttgatgatcaatcattaattgatccattgttgtttacctgtaaaattcatagagatttcgtacatactagttattgatcgattcatcgattatgaatgatgatttccattatatatatgaagagattgatgatcgtgtgttgtttttgtttggaacccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG
species | Glycine max |
transcript | GLYMA01G03720.6 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAA AAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCEST: gi|120532659|gb|EH260792.1|EH260792
genomic: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAAgtaattgatt ... acccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACC
EST: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAA AAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCEST: gi|192296129|gb|FG989489.1|FG989489
genomic: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAAgtaattgatt ... acccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACC
EST: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAA AAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCEST: gi|298168878|gb|HO009808.1|HO009808
genomic: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAAgtaattgatt ... acccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACC
EST: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAA AAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCEST: gi|6070604|gb|AW099991.1|AW099991
genomic: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAAgtaattgatt ... acccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACC
EST: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAA AAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACC
genomic: ATTTCGTCCACCAGATTCATACACAATTCACGTATACGTACAATTATTAAgtaattgatt ... acccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACC
tatatatatgaagagattgatgatcgtgtgttgtttttgtttggaacccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG
gattgat putative branch site (score: 4)
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgatttccaccaatctctttctttgatgatcaatcattaattgatccattgttgtttacctgtaaaattcatagagatttcgtacatactagttattgatcgattcatcgattatgaatgatgatttccattatatatatgaagagattgatgatcgtgtgttgtttttgtttggaacccaaatagAAGGAAGAGATGGCAGGAGAATCATACGAGGAAGCCATCACGAGTCTGACCAAGCTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT