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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagctcttcatcactgttttcaattcatctttttaataatattgatactgatagtaattaatttggattctgatgctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTATGGAACGTGCAGACCGGTCAGCAGTTGTTCACCTTCAATTTCGATTCCCC

Basic information

species Glycine max
transcript GLYMA01G03610.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726207|gb|BW659572.1|BW659572
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
EST: gi|213593280|gb|DB966105.1|DB966105
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
EST: gi|14126517|gb|BG790955.1|BG790955
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
EST: gi|18717773|gb|BM522996.1|BM522996
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
EST: gi|20814918|gb|BQ299396.1|BQ299396
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
EST: gi|213587349|gb|DB955515.1|DB955515
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAAACGGGAAGTGCGGATCAGACCGCCAAGCTA
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAA-CGGGAAGTGCGGATCAGACCGCCAAGCTA
EST: gi|9899499|gb|BE608467.1|BE608467
EST:     CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAA                         GAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT
genomic: CGGCACCTACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGACGTCTCAAgcaagctctt ... gctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaataatattgatactgatagtaattaatttggattctgatgctgcttcagGAGATTCGGGTCGGCTCATAACGGGAAGTGCGGATCAGACCGCCAAGCTATGGAACGTGCAGACCGGTCAGCAGTTGTTCACCTTCAATTTCGATTCCCC
                                              ctgcttc  CT-rich tract
     aataatattgatactg  TA-rich tract