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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaagtatttcagtttttttggggcctttttgtgtttataaactgttgctgatttcagtgatttgttcttattactacagGACTAGTTCTTCATTTTGCACCATTTCATTCATATATCTCAATGGCTCGTGCTACTAACTGGCTTTCGTTCTCTCTCTCCCCAATGGAAATGCTCCGAAC

Basic information

species Glycine max
transcript GLYMA01G02760.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023028|gb|BM094062.1|BM094062
EST:     AATATCACCACCACACCGACATGGAGAAGAAGTAGCTGTCCGTTCAAAGA                         GACTAGTTCTTCATTTTGCACCATTTCATTCATATATCTCAATGGCTCGTG
genomic: AATATCACCACCACACCGACATGGAGAAGAAGTAGCTGTCCGTTCAAAGAgtaagaaagt ... attactacagGACTAGTTCTTCATTTTGCACCATTTCATTCATATATCTCAATGGCTCGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttgtgtttataaactgttgctgatttcagtgatttgttcttattactacagGACTAGTTCTTCATTTTGCACCATTTCATTCATATATCTCAATGGCTCGTGCTACTAACTGGCTTTCGTTCTCTCTCTCCCCAATGGAAATGCTCCGAAC
                     tgctgat  putative branch site (score: 3)
                                        ttcttatt  putative PPT
                                   atttgttcttatta  TA-rich tract