Sequence
atgc intronic sequence ATGC exonic sequencegtatgtttctatgtgtgtgggtctacctgtacatttattgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
Basic information
species | Glycine max |
transcript | GLYMA01G00870.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 4
gtatgtttctatgtgtgtgggtctacctgtacatttattgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
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gtatataacattgtattca--tatactaacaca---aataagttggaaaaaaactattctttttttctcacttcatattattcc-tggtcagGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTAT
upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G004932_T01 (Zea mays), 3'ss of exon 4
---gtatgtttctatgtgtgtgggtctacctgtac-atttattgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
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gtaagatacccctagccaccttg-tttacttgcgggaactcatcactcgtatctaggctgacagaaacctttggactt---gaacct--tttttagGTTTATTTTGGCACCGATGAAGTGAAAGCCTGCATTGTAACTTGTGGAGGCCTGTGCCCTGGGCTTAACACTGTTATCAGGGAACTGGTGTGTGGCTTGT
upper sequence: GLYMA01G00870.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtttctatgtgtgtgggtctacctgtacatttattgacatatg-tggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
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gtaagtctttgtttgt-tatattcatg-gaatttgaaatgataaaagacaataggttttctcttaacatattcttttgggtttt--tttccagGTGTATTTTGAGTCTGATGAAGTTCATGCATGTATTGTGACATGTGGTGGTTTATGCCCTGGCCTCAACACAGTGATTAGGGAAATAGTATGTGGCTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23727923|gb|BU761999.1|BU761999EST: AAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCTGGGCCTCGTCAAAAG GTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGT
genomic: AAGATGGTGCAAGAGGGGTACATTTTAGGCGTGCTGGGCCTCGTCAAAAGgtatgtttct ... tgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgacatatgtggtaccttatttttgtttatggccttctaaaatttgatattcagGTGTACTTTGAAGCAGATGAAGTTCAGGCTGCTATTGTTACTTGTGGGGGTCTGTGTCCTGGGCTCAACACTGTCATTAGGGAATTAGTGTGTGGCTTAC
ttctaaaatttgatat TA-rich tract