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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgcttttcattaatgcttgtcatttatgtaatcgttttacttctcaagcaaaaccctcatttagctcatagcttagccctttacttaatatattctttaatcggtaactcaattccatgtaccaaacagGCTAAATTTTTGGCAGTGTTGATTATTGTACCTTGGGCAATGGACTTTCTGGTTCATGACTATATACTTATGCCATTTTTAGACAG

Basic information

species Glycine max
transcript GLYMA01G00410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208287636|gb|GE081731.1|GE081731
EST:     ATGACATGCTTTATGAAGACCGTGTTTTCCAGTACGCCTCATCAAATTCG                         GCTAAATTTTTGGCAGTGTTGATTATTGTACCTTGGGCAATGGACTTTCTG
genomic: ATGACATGCTTTATGAAGACCGTGTTTTCCAGTACGCCTCATCAAATTCGgttagtgctt ... taccaaacagGCTAAATTTTTGGCAGTGTTGATTATTGTACCTTGGGCAATGGACTTTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccctttacttaatatattctttaatcggtaactcaattccatgtaccaaacagGCTAAATTTTTGGCAGTGTTGATTATTGTACCTTGGGCAATGGACTTTCTGGTTCATGACTATATACTTATGCCATTTTTAGACAG
                           cggtaac  putative branch site (score: 3)
     tttacttaatatattc  TA-rich tract