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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcatttttgttttaatttgatggtgcaacttaaaattttgttttctttgaaattgaaaatctgttatttgctgggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGGAGCCTCGTATACGTACTGGGTTAGGAAAATAACGGAAGATGCAGCGCCT

Basic information

species Glycine max
transcript GLYMA01G00400.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268793|gb|CA819856.1|CA819856
EST:     TATTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAAT                         TAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
genomic: TATTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAATgtgagttcat ... ggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
EST: gi|58020236|gb|CX706978.1|CX706978
EST:     CGGTTGGCTGCTGACGAATCTCTNATCTGCGTCCTTAAAT                         TAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
genomic: CGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAATgtgagttcat ... ggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
EST: gi|8284579|gb|BE022147.1|BE022147
EST:     TATTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAAT                         TAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
genomic: TATTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAATgtgagttcat ... ggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
EST: gi|4292455|gb|AI441907.1|AI441907
EST:     TTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAAT                         TAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
genomic: TTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAATgtgagttcat ... ggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
EST: gi|4290079|gb|AI441567.1|AI441567
EST:     TATTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAAT                         TAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG
genomic: TATTCCCCTGCGGTTGGCTGCTGACGAATCTCTTATCTGCGTCCTTAAATgtgagttcat ... ggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaaattttgttttctttgaaattgaaaatctgttatttgctgggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGGAGCCTCGTATACGTACTGGGTTAGGAAAATAACGGAAGATGCAGCGCCT
     aattttgttttctttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttcatttttgttttaatttgatggtgcaacttaaaattttgttttctttgaaattgaaaatctgttatttgctgggagaagtagTAAAATGGAGTCTGGAGCCCTAGTGTCGTCCGAGAAAGAAGGGCAGCAAGGAGCCTCGTATACGTACTGGGTTAGGAAAATAACGGAAGATGCAGCGCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG