Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattggttataaatttccttggttctctcaaggtagattccataatgatatgacatgacccattacatatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG

Basic information

species Glycine max
transcript GLYMA0028S00210.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0028S00210.2 (Glycine max), 3'ss of exon 1
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 1
aattggttataaatttccttggttctctcaaggtagattccataatgatatgacatgacccattacatatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG
    |    | ||||    ||| |   |     |||    ||    |||   | | |   | |    | | |  |  ||  ||  ||          |||||||   |||| ||   ||| |||||||||||||||||||| ||||| ||||| | |||||| |||
gtaagaccgtgaattataatggcttgttggctttaggaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgttt---------cagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAG

upper sequence: GLYMA0028S00210.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 3'ss of exon 1
aattggttataaatttccttggttctctcaag--gtagattccataatgatatgacatgacccattacatatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG
    ||  ||   ||  || ||   | |  |    |    || ||   |||    ||| | || || |  |  |     |  ||| |  ||| | ||  ||||| || ||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||
-gaaggaaattgtttatctggggagttttgaacaatcagctctatctggatcatgcatcaacc-ttgcccactgttgcttatcttgacactcctctttgcagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321724|gb|GR825041.1|GR825041
EST:     AGTTTGGTTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTG                         ATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCT
genomic: AGTTTGGTTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTGgtaagcaggt ... atattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgacatgacccattacatatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG
                             tactgac  putative branch site (score: 1)
                                        ttctcat  putative PPT
                attacatat  TA-rich tract