1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcagacaaccagcaagctcagtggggcaagggctgcagatgtatcgtatcagtacaggagtctgaccgttcaggctgcgcgtcttgttcgctcgctgcagGCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCACATGGTGGAGTCGTGCAACGGCTTTGCTGAGGTGTTCCCCGAGCACAAGT
species | Chlamydomonas reinhardtii |
transcript | EDP08073 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAG GCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCACEST: gi|10790641|gb|AV628007.1|AV628007
genomic: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAGgtgcgcgttt ... ctcgctgcagGCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCAC
EST: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAG GCCAAGAACGGCGEST: gi|10785365|gb|AV642037.1|AV642037
genomic: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAGgtgcgcgttt ... ctcgctgcagGCCAAGAACGGCG
EST: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAG GCCAAGAACGGCGACAAGGGCGCCCTGTGCGACTTCCGCGACGTGACCCACEST: gi|10790877|gb|AV628243.1|AV628243
genomic: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAGgtgcgcgttt ... ctcgctgcagGCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCAC
EST: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAG GCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCAC
genomic: AGATGCTGGGCATGGGCACCGTCATGTACCCCTCGGAGGTCCTGATCAAGgtgcgcgttt ... ctcgctgcagGCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCAC
gtatcagtacaggagtctgaccgttcaggctgcgcgtcttgttcgctcgctgcagGCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCACATGGTGGAGTCGTGCAACGGCTTTGCTGAGGTGTTCCCCGAGCACAAGT
gtctgac putative branch site (score: 3)
ttcgctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagacaaccagcaagctcagtggggcaagggctgcagatgtatcgtatcagtacaggagtctgaccgttcaggctgcgcgtcttgttcgctcgctgcagGCCAAGAACGGCGACAAGGGCGCCCTGGGCGACTTCCGCGACGTGACCCACATGGTGGAGTCGTGCAACGGCTTTGCTGAGGTGTTCCCCGAGCACAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - acaacca
- - - - - - -aagctca
- - - - - - - - - - - - - - - - - - -gatgtat