1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atgtgcactgggccaatggacgcctgctgagcccctggtctagcctgttgtgacgcttctacgttctcgcccgctgcctccctccctcccttccctccagTTCGACAACATCTACAAGCTAGTGGGCGTGCCCGTCATCACCGTGCAGCTGCGCTACGACGGCTGGGTGACCGAGATGCAGACG
species | Chlamydomonas reinhardtii |
transcript | EDP07040 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCCGGCATCAAGAAGTTCCTGCCCGCGCCCTGGCGCCAGTACAAGGGAG TTCGACAACATCEST: gi|15697162|gb|BI721467.1|BI721467
genomic: GCCCGGCATCAAGAAGTTCCTGCCCGCGCCCTGGCGCCAGTACAAGG-AGgtgaggctgg ... ttccctccagTTCGACAACATC
EST: TGCCCGGCATCAAGAAGTTCCTGCCCGCGCCCTGGCGCCAGTACAAGGAG TTCGACAACATCTACAAGCTAGTGGGCGTGCCCGTCATCACCGTGCAGCTG
genomic: TGCCCGGCATCAAGAAGTTCCTGCCCGCGCCCTGGCGCCAGTACAAGGAGgtgaggctgg ... ttccctccagTTCGACAACATCTACAAGCTAGTGGGCGTGCCCGTCATCACCGTGCAGCTG
tgttgtgacgcttctacgttctcgcccgctgcctccctccctcccttccctccagTTCGACAACATCTACAAGCTAGTGGGCGTGCCCGTCATCACCGTGCAGCTGCGCTACGACGGCTGGGTGACCGAGATGCAGACG
cttctacgttctcgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgcactgggccaatggacgcctgctgagcccctggtctagcctgttgtgacgcttctacgttctcgcccgctgcctccctccctcccttccctccagTTCGACAACATCTACAAGCTAGTGGGCGTGCCCGTCATCACCGTGCAGCTGCGCTACGACGGCTGGGTGACCGAGATGCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
atgtgca
- - - - - - - - - - - - - - - - - - - - - - -tgttgtg