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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcacgggggttgagggacgggcgcgactcataacaggtcgctatctgaaaccgggtgaggttgcatgcggagtgacggtgcagcctgccgcggttgtggtgagtactgcaacgtgcttggtcttgttgctggagccagtccaagtatgacgggtatgttcacggttgacatgacgtgtagGGCGACTTTGAGGAGGCGTTTACCATTCCTCTGGACACCATGCCGCTCAACGGCGTGGGCCAGTGCTACACGGTAGTGACTCGGCCGCCGGGCGCCATCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04926
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161816351|gb|FC100497.1|FC100497
EST:     TGGAGCAGGTGCTGGAGGACGTCAGCGTGGCCATGGACCTGGCGGATGCG                         GGCGACTTTGAGGAGGCGTTTACCATTCCTCTGGACACCATGCCGCTCAAC
genomic: CGGAGCAGGTGCTGGAGGACGTCAGCGTGGCCATGGACCTGGCGGATGCGgtgagtgcac ... tgacgtgtagGGCGACTTTGAGGAGGCGTTTACCATTCCTCTGGACACCATGCCGCTCAAC
EST: gi|15692731|gb|BI717036.1|BI717036
EST:     CGGAGCAGGTGCTGGAGGACGTCAGCGTGGCCATGGACCTGGCGGATGCG                         GGCGACTTTGAGGAGGCGTTTACCATTCCTCTGGACACCATGCCGCTCAAC
genomic: CGGAGCAGGTGCTGGAGGACGTCAGCGTGGCCATGGACCTGGCGGATGCGgtgagtgcac ... tgacgtgtagGGCGACTTTGAGGAGGCGTTTACCATTCCTCTGGACACCATGCCGCTCAAC
EST: gi|16428799|gb|BI994041.1|BI994041
EST:     CGGAGCAGGTGCTGGAGGACGTTAGCGTGGCCATGGACCTGGCGGATGCG                         GGCGACTTTGAGGAGGCG
genomic: CGGAGCAGGTGCTGGAGGACGTCAGCGTGGCCATGGACCTGGCGGATGCGgtgagtgcac ... tgacgtgtagGGCGACTTTGAGGAGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctggagccagtccaagtatgacgggtatgttcacggttgacatgacgtgtagGGCGACTTTGAGGAGGCGTTTACCATTCCTCTGGACACCATGCCGCTCAACGGCGTGGGCCAGTGCTACACGGTAGTGACTCGGCCGCCGGGCGCCATCG
                                     ggttgac  putative branch site (score: 4)