1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgtgaagagcacaaggacaatgacacagcaagcatatagccccagccagcagcagcatgccgacggtggttccctgctggtgtgtttgcaaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGTTCCTCGAAATCGACAAGGACAAGAGCGGCACCATCTCCGTGGAGGAGT
species | Chlamydomonas reinhardtii |
transcript | EDP04678 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|161814667|gb|FC100431.1|FC100431
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|161790532|gb|FC080015.1|FC080015
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|161814378|gb|FC103730.1|FC103730
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTEST: gi|161817487|gb|FC100855.1|FC100855
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCT
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|14233757|gb|BG852573.1|BG852573
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|14226566|gb|BG845398.1|BG845398
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|161800857|gb|FC084103.1|FC084103
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGEST: gi|161794416|gb|FC081889.1|FC081889
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
EST: GCATGAAGCAGTTCAGCGCCATGAACCGCCTCAAGAAGGAGGCGCTCAAG CTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
genomic: GCATGAAGCAGTTCAGCGCCATGAACCGGCTCAAGAAGGAGGCGCTCAAGgtgcgggcgc ... aaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgaagagcacaaggacaatgacacagcaagcatatagccccagccagcagcagcatgccgacggtggttccctgctggtgtgtttgcaaccccgcagCTGATTGCCAAGAGCCTGCCCCTGGACGAGATCAACGGCATGCGCGAGCTGTTCCTCGAAATCGACAAGGACAAGAGCGGCACCATCTCCGTGGAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - -acaagga
- - - - - - - - - -aatgaca
- - - - - - - - - - - - - - - aagcata
- - - - - - - - - - - - - - - - - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgt