1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgcggggggcgtggggggcgtatgtgcagctgtgactacggctggggctggctgggaggctgggggcaggttggagttgcgggggtctgtagagctggtcgttcttgtgcatccacgctccatccatactcccactcatatatacacacacacacgcccccacagGTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCCTCGCACCTGCTCGGGGACAAGGGGCTGGACGGCACCCCGCTGGGCCTG
species | Chlamydomonas reinhardtii |
transcript | EDP04612 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCCAGGCATCAAGGCCAGCAAGTCCGACAAGCCGCAGAACAGCAAG GTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCCEST: gi|16429291|gb|BI994517.1|BI994517
genomic: GCGGCCCAGGCATCAAGGCCAGCAAGTCCGACAAGCCGCAGAACAGCAAGgtgcgggggg ... gcccccacagGTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCC
EST: CGACAAGCCGCAGAACAGCAAG GTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTCAGCCTGGCCGGCGCCEST: gi|16438040|gb|BM003260.1|BM003260
genomic: CGACAAGCCGCAGAACAGCAAGgtgcgggggg ... gcccccacagGTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCC
EST: GCAGAACAGCAAG GTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTCAGCCTGGCCGGCGCC
genomic: GCAGAACAGCAAGgtgcgggggg ... gcccccacagGTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCC
atccacgctccatccatactcccactcatatatacacacacacacgcccccacagGTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCCTCGCACCTGCTCGGGGACAAGGGGCTGGACGGCACCCCGCTGGGCCTG
cgccccc CT-rich tract
tcatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggggggcgtggggggcgtatgtgcagctgtgactacggctggggctggctgggaggctgggggcaggttggagttgcgggggtctgtagagctggtcgttcttgtgcatccacgctccatccatactcccactcatatatacacacacacacgcccccacagGTTGGCCTGCACGTGGACTTTGCGCCCACCATTCTGAGCCTGGCCGGCGCCTCGCACCTGCTCGGGGACAAGGGGCTGGACGGCACCCCGCTGGGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA