1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgcggccgccgcgccacgtgaagttcacctggtccagatggccctcttgttgcatgtttctgattgtctcccaccacgccgccccctcccgccatctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGAGCTGCCGCAGGCCTTTGCCCGCCTGAGTGCCGTGTACGGCGGCACCTAC
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAG GTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGAEST: gi|23365054|gb|BU652874.1|BU652874
genomic: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAGgtgcggccgc ... atctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGA
EST: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAG GTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGAEST: gi|10768527|gb|AV619352.1|AV619352
genomic: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAGgtgcggccgc ... atctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGA
EST: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAG GTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGAEST: gi|23367839|gb|BU655657.1|BU655657
genomic: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAGgtgcggccgc ... atctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGA
EST: GCCATGCCCACCGTGCTGCGGATCAAGCTTTACCACGAGTCGCTGTTCAG GTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGA
genomic: GCCATGCCCACCGTGCTGCGGATCAAGCTCTACCACGAGTCGCTGTTCAGgtgcggccgc ... atctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGA
gttgcatgtttctgattgtctcccaccacgccgccccctcccgccatctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGAGCTGCCGCAGGCCTTTGCCCGCCTGAGTGCCGTGTACGGCGGCACCTAC
ttctgat putative branch site (score: 3)
ccccctcccgccatct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggccgccgcgccacgtgaagttcacctggtccagatggccctcttgttgcatgtttctgattgtctcccaccacgccgccccctcccgccatctgcgcagGTACGAGGGCCTCAACTCGCCCTACCTGTACCCGCGCTACGGGCTGGGCGAGCTGCCGCAGGCCTTTGCCCGCCTGAGTGCCGTGTACGGCGGCACCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC